Publications

omnideconv: a unifying framework for using and benchmarking single-cell-informed deconvolution of bulk RNA-seq data

Dietrich A.*, Merotto L.*, et al. Genome Biology 27(1):6 (2026)

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NovumRNA: Accurate prediction of non-canonical tumor antigens from RNA sequencing data

Ausserhofer M. et al. iScience 28(10):113448 (2025)

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Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion

Lapuente-Santana O., Sturm G. et al. iScience 27(8), 110529 (2024)

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Interpretable systems biomarkers predict response to immune-checkpoint inhibitors

Lapuente-Santana O., Sturm G. et al. Patterns 2(8), 100293 (2021)

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Next-generation computational tools for interrogating cancer immunity

Finotello F. et al. Nature Reviews Genetics 20(12), 724-746 (2019)

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Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Finotello F. et al. Genome Medicine 11(1), 34 (2019)

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