Events

December 18, 2025 - 2:00 p.m.

• Irene Rigato: Scvi-hub: an actionable repository for model-driven single cell analysis [Journal Club]

November 20, 2025 - 2:00 p.m.

• Lorenzo Merotto: Deep autoencoder for interpretable tissue-adaptive deconvolution and cell-type-specific gene analysis [Journal Club]

October 9, 2025 - 2:00 p.m.

• Felix Petschko: A visual–omics foundation model to bridge histopathology with spatial transcriptomics [Journal Club]

February 13, 2025 - 11:00 a.m.

• Irene Rigato: Alleviating batch effects in cell type deconvolution with SCCAF-D [Journal Club]

December 3, 2024 - 11:00 a.m.

• Sophie Grüner: Exploring lineage composition in human cerebral organoids with scRNA-Seq

November 5, 2024 - 2:00 p.m.

• Marcel Tisch: Characterization of earliest neuroepithelial progenitor cell lines derived from human embryonic brain tissue

May 10, 2023 - 11:30 a.m.

• Bernhard Eder: Challenges and best practices in scientific software development

April 26, 2023 - 10:30 a.m.

• Marcel Tisch: The ChatGPT revolution: chat your way to better science

February 21, 2023 - 11:00 a.m.

• Manuel Fiegl: Unconventional workarounds when working with unconventional animal models: tracing molecular mechanisms in cardiac regeneration in Zebrafish

February 1, 2023 - 10:30 a.m.

• Julianne Beirute-Herrera: Generation and demultiplexing of gene-cell count matrices from a 10x scRNA-seq experiment

November 8, 2022 - 11:00 a.m.

• Constantin Zackl and Maria Zopoglou: Characterization of the cellular composition of tumors using spatial transcriptomics

September 6, 2022 - 11:00 a.m.

• Jerome Mertens, Christopher Esk, Oliver Borgogno, and Lisa Fellner: Aging Clocks

July 26, 2022 - 11:00 a.m.

• Lorenzo Merotto: Benchmarking atlas-level data integration in single-cell genomics (Journal Club)

June 7, 2022 - 11:00 a.m.

• Manuel Fiegl: Molecular genetic role of innate immune system mediated TLR3 signalling in zebrafish cardiac infraction regeneration

May 3, 2022 - 11:00 a.m.

• Martina Podlesnic: Single-cell RNA seq analysis of induced neural stem cells
• Angeliki Spathopoulou: Regional identity of induced neural stem cells derived from direct conversion

March 1, 2022 - 11:00 a.m.

• Marcel Tisch: Mapping single-cell data to reference atlases by transfer learning [Journal Club]
• Marcel Tisch: Characterization of human fetal-derived early neural progenitors cells through single-cell transcriptome analysis
• Sarah Berger: Mnx1-mutant zebrafish as a Diabetes Type I model to study long-term effects of hyperglycemia on islet-architecture